Core

This module contains the core functions of AnnDictionary. This includes:

• The AdataDict class

• functions to iterate over AdataDict objects

• functions to build, write, read, and concatenate AdataDict objects

Table of Contents

• AdataDict Class
  • AdataDict
    • AdataDict.hierarchy
  • Manipulate the hierarchy
    • anndict.AdataDict.set_hierarchy
    • anndict.AdataDict.add_stratification
    • anndict.AdataDict.flatten
  • Iterate over AdataDict
    • anndict.AdataDict.fapply
    • anndict.AdataDict.fapply_return
  • Index with a boolean mask
    • anndict.AdataDict.index_bool
  • Set .obs and .var index
    • anndict.AdataDict.set_obs_index
    • anndict.AdataDict.set_var_index
  • Miscellaneous
    • anndict.AdataDict.check_structure
    • anndict.AdataDict.copy
• Iterate over AnnDictionaries
  • anndict.adata_dict.adata_dict_fapply
    • adata_dict_fapply()
• Build, Write, and Read AnnDictionaries
  • Build
    • anndict.adata_dict.build_adata_dict
  • Add Stratification
    • anndict.adata_dict.add_stratification
  • Write
    • anndict.adata_dict.write_adata_dict
  • Read
    • anndict.adata_dict.read_adata_dict
    • anndict.adata_dict.read_adata_dict_from_h5ad
  • Concatenate
    • anndict.adata_dict.concatenate_adata_dict