anndict.ai_unify_labels

anndict.ai_unify_labels(adata_dict, label_columns, new_label_column, simplification_level='unified, typo-fixed')

Unifies cell type labels across multiple AnnData objects by mapping them to a simplified, unified set of labels.

Parameters:

adata_dict AdataDict

An AdataDict.

label_columns dict[tuple[str, ...], str]

dict where keys should be the same as the keys of adata_dict and values are the column names in the corresponding adata.obs containing the original labels.

new_label_column str

Name of the new column to be created in each adata.obs for storing the unified labels.

simplification_level str (default: 'unified, typo-fixed')

Instructions on how to unify the labels.

Return type:

dict

Returns:

A mapping dict where the keys are the original labels and the values are the unified labels.

Notes

Modifies each adata in adata_dict in-place by adding adata.obs[new_label_column] with the unified label mapping.