anndict.utils.build_adata_from_visium

anndict.utils.build_adata_from_visium(paths_dict, hd=False)

Processes Visium data from input directories and saves the processed AnnData objects to specified output paths.

Parameters:

paths_dict dict[str, str]

A dictionary with input directories as keys and output file paths as values.

hd bool (default: False)

If True, converts 'spatial' to float and 'obs' columns to integers.

Return type:

None

Returns:

None

Notes

Writes the processed AnnData objects to the specified output paths.

Example

paths_dict = {
    'input_dir1': 'output_path1.h5ad',
    'input_dir2': 'output_path2.h5ad'
}

build_adata_from_visium(paths_dict, hd=True)