Single Column

This module contains functions that process labels within a single column.

In the .obs

To process cell type labels (or other .obs columns)

simplify_obs_column(adata, column, ...[, ...])	Simplifies labels in the specified column of the AnnData object and stores the result in a new column using map_cell_type_labels_to_simplified_set().
create_label_hierarchy(adata, col, ...)	Create a hierarchy of simplified labels based on a given column in AnnData.
map_cell_type_labels_to_simplified_set(labels)	Maps a list of labels to a simplified set of labels using an LLM, processing in batches.

In the .var

To process gene names

simplify_var_index(adata, column, ...[, ...])	Simplifies gene names in the index of the AnnData object's var attribute based on a boolean column, and stores the result in a new column using the map_gene_labels_to_simplified_set().
map_gene_labels_to_simplified_set(labels[, ...])	Maps a list of genes to a simplified set of labels using an LLM, processing in batches.