Transfer Labels

This subpackage contains functions to transfer labels (from an already labeled adata to an unlabeled adata).

Using an sklearn classifier

This module handles label transfer via sklearn models.

transfer_labels_using_classifier(...[, ...])	Transfers labels from origin_adata to destination_adata using a classifier of type classifier_class.
train_label_classifier(adata, label_key, ...)	Trains a classifier on the given adata; used internally by transfer_labels_using_classifier().

Based on harmony integration

Label transfer via harmony integration.

harmony_label_transfer(origin_adata, ...)

Perform Harmony integration and transfer labels from origin_adata to destination_adata.