anndict.utils.create_anndata

anndict.utils.create_anndata(sparse_array, genes, coords_top_left)

Creates an AnnData object from the sparse matrix and coordinates.

Parameters:

sparse_array csr_matrix

The sparse matrix with gene counts.

genes array

The unique genes.

coords_top_left list[list[int]]

The list of top-left coordinates of each box.

Return type:

AnnData

Returns:

An AnnData object containing the gene counts and metadata.