Annotating with AnnDictionary

AnnDictionary provides a suite of tools for annotating single-cell data and comparing the results. These notebooks demonstrate several of these tools. For the full list, see the documentation, including:

• Annotate Cells

• Annotate Genes

• Plot

• Annotating Gene Sets with Biological Processes Using an LLM
• Automated Cell Type Marker Gene Scores
• Cell Type Annotation with Large Language Models (LLMs)
• Transfer Labels Using an Sklearn Classifier
• Automated Annotation of Spatial Transcriptomics