anndict.ensure_label_consistency_adata

anndict.ensure_label_consistency_adata(adata, cols, simplification_level='unified, typo-fixed', new_col_prefix='consistent')

Wrapper function to ensure label consistency across specified columns in an AnnData object.

Parameters:

adata AnnData

An AnnData object.

cols list[str]

List of column names in adata.obs to ensure label consistency.

simplification_level str (default: 'unified, typo-fixed')

Qualitative direction about how to process the labels.

new_col_prefix str (default: 'consistent')

Prefix to use when creating new columns in adata.obs. Setting new_col_prefix = "" would overwrite the original columns.

Return type:

dict

Returns:

Dict mapping original labels to the unified set of labels.

Notes

Updates adata in-place with a shared set of labels labels in adata.obs[new_col_prefix + cols].

Useful when calculating inter-rater reliability. To calculate measures of inter-rater reliability, see below:

See also

kappa_adata()

To calculate both Cohen’s and Fleiss’s Kappa, a measure of inter-rater reliability.

krippendorff_alpha_adata()

To calculate Krippendorff’s Alpha, a measure of inter-rater reliability.