Utils# This module contains utility functions for AnnDictionary. AnnDictionary Some utility functions for string processing Metadata summary functions Miscellaneous AnnData Get column names from adata.obs with string matching Remove genes Add metadata Convert column dtypes Filter a list of genes based on their presence in adata.var.index Scanpy Complex downsampling of AnnData, optionally dropping small cell types PCA Density Filter Filter cells based on density in PCA space Stabilizing Classifier anndict.utils.stable_label_adata anndict.utils.stable_label Read Spatial Data Build anndata from Visium data Add blank image to AnnData Other functions used under-the-hood to construct Anndata from spatial data UCE Universal Cell Embedding
