Scanpy

Utility functions for scanpy.

Complex downsampling of AnnData, optionally dropping small cell types

sample_and_drop(adata, strata_keys[, ...])	Sample adata based on specified strata keys and drop strata with fewer than the min_num_cells.
sample_adata_dict(adata_dict, **kwargs)	Samples each AnnData in adata_dict using sc.pp.subsample().